Seminars

Multicellular feedback control for microbial consortia

May 4th at 12:15-13:15

Room 201 DEI-A

Davide Fiore (Universita' di Napoli, Federico II)

Multicellular feedback control for microbial consortia

Abstract:
Synthetic biology aims at engineering biological systems with new functionalities, with applications ranging from personalized health treatments to bioremediation and the production of biofuels and drugs in bioreactors. This is made possible by designing artificial genetic circuits and embedding them into living cells, such as bacteria or yeast, changing their natural behavior, that is by modifying when and how much genes are expressed to produce proteins or other chemicals of interest. However, the level of complexity and the functions of such engineered genetic circuits are limited by intrinsic factors in the host cells, such as excessive metabolic burden, competition of limited resources and incompatible chemical reactions. To overcome these limitations, a promising strategy is to distribute the required functionalities among multiple cell populations, forming a microbial consortium, so that each cell strain embeds a smaller subset of engineered gene networks. However, this comes at the cost of engineering more complex systems in which each actor involved, i.e., a microbial species, cooperates with the others, sharing resources for their growth and communicates to maintain the community in health and the rate of bioreactions at the desired level. Therefore, the new challenge is to develop new feedback control strategies inside the microbial community to guarantee, at the same time, cooperation, communication, stable coexistence between the species involved, and reliable and robust bioproduction.

Bio:
Davide Fiore is Assistant Professor of Automatic Control at the Department of Mathematics and Applications “R. Caccioppoli”, University of Naples Federico II. He is currently working on synthetic biological applications. He received his Bachelor’s and Master’s degrees in Automation Engineering from University of Naples Federico II in 2010 and 2013, respectively. In May 2017, he received his Ph.D. in Information Technology and Electrical Engineering from the University of Naples Federico II, Italy, under the supervision of Prof. Mario di Bernardo. During his Ph.D., he visited the University of Cambridge, UK, and the University of Bristol, UK. In 2017 he did a research internship at IBM Research Ireland on distributed optimization and consensus. From 2017 to 2019 he held a Postdoctoral Researcher position at the University of Naples Federico II working on convergence analysis and control of stochastic multi-agent systems in synthetic biological applications in the context of the H2020 FET-OPEN project “COSY-BIO”. From July 2022 he is Associate Editor of the IEEE CSS Conference Editorial Board. From May 2020 he is Assistant Professor – fixed term, at the University of Naples Federico II, Italy. His research interests include nonlinear systems and control, switched and hybrid systems, multi-agent systems, and synthetic biology.

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